Hi everyone, I downloaded one of E.coli's strains fasta file from here. unfortunately i couldn't find its compatible gff file. in this point if any one can help me find one it could be awsome!
I wrote a script converting fasta to gff3 using gene features fasta file found in the same link. most of gene locations are describes as: [location=376807..377172]
but some of them has this format: [location=join(385707..387164,388426..389874)]
looking further more it seems to belong Pseudogenes. does anyone knows how can i annotate them correctly into my gff file?
thanks a lot