Question: (Closed) Is there any open source Python bacterial GWAS-based software and a tutorial to learn on an example?
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gravatar for bioinform
2.3 years ago by
bioinform20
bioinform20 wrote:

Is there any open source Python bacterial GWAS-based software and a tutorial to learn on an example? Need an example with a readable clean and documented codes. Want to find a software example where VCFs are converted to a 0/1 matrix and phenotype matrix is created from the web-hosted XML data. Then these matrices are compiled and statistical tests such as ANOVA, Rho, Tau and with RF and SVM are run to get reports and gene interaction visualization.

association gwas software • 826 views
ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by bioinform20

What is the application of such a software? What do you need it for?

ADD REPLYlink written 2.3 years ago by Michael Dondrup46k

Bacterial GWAS..........

ADD REPLYlink written 2.3 years ago by bioinform20

Please pay attention to your previous questions, respond to comments and validate answers that you have received.

ADD REPLYlink written 2.3 years ago by Michael Dondrup46k

Hello bioinform!

We believe that this post does not fit the main topic of this site.

Not a real question, -> bot.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

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ADD REPLYlink written 2.3 years ago by Michael Dondrup46k
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