Is there any open source Python bacterial GWAS-based software and a tutorial to learn on an example? Need an example with a readable clean and documented codes. Want to find a software example where VCFs are converted to a 0/1 matrix and phenotype matrix is created from the web-hosted XML data. Then these matrices are compiled and statistical tests such as ANOVA, Rho, Tau and with RF and SVM are run to get reports and gene interaction visualization.
Question: (Closed) Is there any open source Python bacterial GWAS-based software and a tutorial to learn on an example?
2.3 years ago by
bioinform • 20
bioinform • 20 wrote:
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