Question: WGS human normal panel
gravatar for benjaminnguyen90
2.1 years ago by
benjaminnguyen900 wrote:

We would like to calls CNVs from some human cancer cell lines (paired reads and WGS 5x coverage) utilizing GATK. We would like to obtain the normal panel (paired reads and WGS 5x coverage). Could you please point us to one ?

cnv normal panel • 756 views
ADD COMMENTlink modified 2.1 years ago by Emily_Ensembl19k • written 2.1 years ago by benjaminnguyen900

several vendors offer "comprehensive cancer panel" with different sets of panel genes. I would suggest COSMIC comprehensive list, if you are interested in cancer variants.

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by cpad011211k
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