NCI-60 RNA-seq data
3
0
Entering edit mode
5.5 years ago
nvucic ▴ 70

Hello,

Can someone tell me is it possible and if it is, how to obtain raw RNA-seq data for NCI-60 cell lines from this project: https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA282446?

Thank you

rna-seq next-gen raw data • 2.7k views
ADD COMMENT
1
Entering edit mode
5.5 years ago

Looks like it is controlled access. I checked on the EBI ENA too, which make FASTQ files available, but no options there either. Contact the project manager or check the publication for details ?

ADD COMMENT
1
Entering edit mode
4.3 years ago

You will need dbGAP access to retrieve data from SRA of this kind. This data I think was not submitted using normal SRA portal and was submitted through dbGAP portal : https://www.ncbi.nlm.nih.gov/sra/docs/submitdbgap/

Cheers !!

ADD COMMENT
0
Entering edit mode

this comment was deleted. there was a mix up in the cell line panel of interest.

ADD REPLY
0
Entering edit mode
4.3 years ago
elmbeech ▴ 70

this answer was deleted. there was a mix up in the cell line panel of interest.

ADD COMMENT

Login before adding your answer.

Traffic: 2015 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6