I have a bunch of SRR IDs and need to download Fastq files for the same.
I tried downloading SRAtoolkit for the same by doing
apt-get install sra-toolkit export PATH=$PATH:$PWD/sratoolkit.2.8.2-1-ubuntu64/bin which fastq-dump /User/sratoolkit.2.8.2-1-ubuntu64/bin/fastq-dump fastq-dump --stdout SRR390728 | head -n 8
Shows an error like
fastq-dump.2.8.2 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -29184 ( SSL - An invalid SSL record was received ) fastq-dump.2.8.2 err: item not found while constructing within virtual database module - the path 'SRR390728' cannot be opened as database or table
What should I do? Is there any other way to download read files rather than using fastq-dump?
Since I have multiple SRR IDs, is there any other method I can download all the Fastq files in a go?