Question: RNA-seq visualization tools
gravatar for maeva.giraudo
2.5 years ago by
maeva.giraudo0 wrote:

Hi all, What would be your best/preferred/go-to method or tool for presenting RNA-seq results for differentially expressed genes?

I have been working with RNA-seq for a few years now to identify genes responding to contaminants in fish but I am feeling stuck in the same pattern of data visualization and presentation for publication involving volcano plots, GO enrichment and boxplots. I am looking for some new inspiration!.

Any suggestion will be greatly appreciated :)


rna-seq figure R • 2.1k views
ADD COMMENTlink written 2.5 years ago by maeva.giraudo0
gravatar for A
2.5 years ago by
A3.7k wrote:

A simple and good workbench that I have already used to draw volcano plot, but has much more options

simply download, install, upload list of differentially expressed genes, determine control and treatment samples, finally by t-test you would be able to draw many relevant plots. about GO, I use Cytoscape-BINGO plugin. simply copy and paste the list of your differentially expressed genes and a plot of GO would be illustrated. I have also used PANTHER for drawing chart of GO terms, very simple

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by A3.7k
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