Question: DE gene analysis
0
gravatar for priyas772
11 months ago by
priyas7720
priyas7720 wrote:

I performed differential gene analysis on two GEO datasets using NetworkAnalyst , i found set of up- and down- regulated genes using Fisher's method. Since I am new to the area of analysis , i wanted to know how to further proceed with the analysis to find a biomarker Thank You!

de genes • 487 views
ADD COMMENTlink modified 11 months ago by mforde841.2k • written 11 months ago by priyas7720
0
gravatar for mforde84
11 months ago by
mforde841.2k
mforde841.2k wrote:

Gene set enrichment analysis is a good next step. You can do a contrast based analysis with something like EGSEA, or you can do per sample enrichment scores with GSVA.

ADD COMMENTlink written 11 months ago by mforde841.2k

Hii! Is there any codes available for doing the enrichment analysis using EGSEA in R?

ADD REPLYlink written 11 months ago by priyas7720

Yes. The package has plenty of documentation and working code samples.

ADD REPLYlink written 11 months ago by mforde841.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2067 users visited in the last hour