Question: Comparison between Rnaseq and microRnaseq from Firebrowse cancer patients
gravatar for sofia.ibamol22
19 months ago by
sofia.ibamol220 wrote:


I am working with Rnaseq and microRnaseq from patients from TCGA. My aim is to download both files from Firebrowse. But I have realised that there are different types of files:

For microRNAseq:

illuminahiseq_mirnaseq-miR_gene_expression (MD5) illuminahiseq_mirnaseq-miR_isoform_expression (MD5) miRseq_Mature_Preprocess (MD5) miRseq_Preprocess (MD5)

I get the first one

For RNAseq:

mRNAseq_Preprocess (MD5) illuminahiseq_rnaseqv2-junction_quantification (MD5) illuminahiseq_rnaseqv2-exon_quantification (MD5) illuminahiseq_rnaseqv2-RSEM_isoforms_normalized (MD5) illuminahiseq_rnaseqv2-RSEM_genes (MD5) illuminahiseq_rnaseqv2-RSEM_genes_normalized (MD5) illuminahiseq_rnaseqv2-RSEM_isoforms (MD5)

I have discard the first four and the last one.

So, what would you use to compare with microRna, RSEM_genes or RSEM_genes_normalized? And why? My plan is then mix both files by patient ID and do correlations.

Thank you in advance !!

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