Question: Comparing time series expression data
1
gravatar for The
3.5 years ago by
The160
United States
The160 wrote:

Hello I wish to know if you can suggest any articles /methods/software which are used for comparing two time series gene expression studies.

One of the software STEM can compare gene clusters (of similar profiles) with clusters from the 2nd study. It calculates correlation between clusters and the statistical significance of the degree of overlap of cluster member genes.

Another way of comparison could possibly be helpfuls is ANOVA-SCA( ANOVA Simultaneous component analysis).

Any other suggestions?

Thanks in advance

gene expression time series • 2.0k views
ADD COMMENTlink modified 2.6 years ago by Biostar ♦♦ 20 • written 3.5 years ago by The160

I’ve just asked a fragment of your question in google.

‘comparing two time series gene expression studies’

It gave a lot of omics-tools and other links, for example:

Time-course data analysis software tools

https://omictools.com/time-course-category

A PNAS paper that looks interesting.

http://www.pnas.org/content/100/18/10146

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by natasha.sernova3.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1160 users visited in the last hour
_