Question: Comparing time series expression data
1
gravatar for The
22 months ago by
The100
United States
The100 wrote:

Hello I wish to know if you can suggest any articles /methods/software which are used for comparing two time series gene expression studies.

One of the software STEM can compare gene clusters (of similar profiles) with clusters from the 2nd study. It calculates correlation between clusters and the statistical significance of the degree of overlap of cluster member genes.

Another way of comparison could possibly be helpfuls is ANOVA-SCA( ANOVA Simultaneous component analysis).

Any other suggestions?

Thanks in advance

gene expression time series • 1.0k views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 22 months ago by The100

I’ve just asked a fragment of your question in google.

‘comparing two time series gene expression studies’

It gave a lot of omics-tools and other links, for example:

Time-course data analysis software tools

https://omictools.com/time-course-category

A PNAS paper that looks interesting.

http://www.pnas.org/content/100/18/10146

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

ADD REPLYlink modified 11 months ago • written 11 months ago by natasha.sernova3.5k
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