Comparing time series expression data
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4.8 years ago
The ▴ 170

Hello I wish to know if you can suggest any articles /methods/software which are used for comparing two time series gene expression studies.

One of the software STEM can compare gene clusters (of similar profiles) with clusters from the 2nd study. It calculates correlation between clusters and the statistical significance of the degree of overlap of cluster member genes.

Another way of comparison could possibly be helpfuls is ANOVA-SCA( ANOVA Simultaneous component analysis).

Any other suggestions?

Thanks in advance

gene expression time series • 2.4k views
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I’ve just asked a fragment of your question in google.

‘comparing two time series gene expression studies’

It gave a lot of omics-tools and other links, for example:

Time-course data analysis software tools

https://omictools.com/time-course-category

A PNAS paper that looks interesting.

http://www.pnas.org/content/100/18/10146

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

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