Question: Looking for small RNA-seq in single cell
1
gravatar for jack
20 months ago by
jack750
Germany
jack750 wrote:

Hey,

I'm looking database that contains small RNA-seq for single cell. Is there any resource to download single cell small RNA-seq ?

sequencing rna-seq genome • 1.0k views
ADD COMMENTlink modified 20 months ago by EagleEye6.2k • written 20 months ago by jack750
1
gravatar for aka001
20 months ago by
aka001190
Sweden
aka001190 wrote:

I don't think such database currently exists, given the fact that (one of) the method paper(s) (Single-cell sequencing of the small-RNA transcriptome) was just published quite recently. Looking at that, I would say such database will be there in a year or two in the best case.

ADD COMMENTlink modified 20 months ago • written 20 months ago by aka001190

Also it would highly depend on what kind of cells you want, which organism, etc. It is most probably still years from now.

ADD REPLYlink written 20 months ago by aka001190
0
gravatar for EagleEye
20 months ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:

These are ENCODE small RNA-seq dataset.

ADD COMMENTlink written 20 months ago by EagleEye6.2k

Unclear if any are single-cell but at least there are examples of cell types.

ADD REPLYlink modified 20 months ago • written 20 months ago by genomax65k
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