Question: Looking for small RNA-seq in single cell
1
gravatar for jack
2.2 years ago by
jack790
Germany
jack790 wrote:

Hey,

I'm looking database that contains small RNA-seq for single cell. Is there any resource to download single cell small RNA-seq ?

sequencing rna-seq genome • 1.2k views
ADD COMMENTlink modified 2.2 years ago by EagleEye6.5k • written 2.2 years ago by jack790
1
gravatar for aka001
2.2 years ago by
aka001190
Sweden
aka001190 wrote:

I don't think such database currently exists, given the fact that (one of) the method paper(s) (Single-cell sequencing of the small-RNA transcriptome) was just published quite recently. Looking at that, I would say such database will be there in a year or two in the best case.

ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by aka001190

Also it would highly depend on what kind of cells you want, which organism, etc. It is most probably still years from now.

ADD REPLYlink written 2.2 years ago by aka001190
0
gravatar for EagleEye
2.2 years ago by
EagleEye6.5k
Sweden
EagleEye6.5k wrote:

These are ENCODE small RNA-seq dataset.

ADD COMMENTlink written 2.2 years ago by EagleEye6.5k

Unclear if any are single-cell but at least there are examples of cell types.

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by genomax72k
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