Question: How to use stringdb offline for finding interactions between 4000 protein sequences?
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gravatar for Dattatray Mongad
3.1 years ago by
National Centre for Cell Science, Pune
Dattatray Mongad350 wrote:

Web server limits the search for more sequences. I am new to this database. I wanted to predict protein-protein interactions between around 4000 protein sequences which are predicted by GenMark.

sequence • 936 views
ADD COMMENTlink modified 3.1 years ago by genomax89k • written 3.1 years ago by Dattatray Mongad350
0
gravatar for genomax
3.1 years ago by
genomax89k
United States
genomax89k wrote:

Refer to this thread for downloading STRING data and other things: String Database download data including interactions

ADD COMMENTlink written 3.1 years ago by genomax89k

I have downloaded interactions. Now I have sequences of about 4-5K proteins. I want to scan all those sequences and predict a PPI. As the webservice of stringDB does not support such large size of input, I have to do it offline. Just simply my question is ------------ How to use PPI data to scan against protein sequences?

ADD REPLYlink written 3.1 years ago by Dattatray Mongad350
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