Question

Any implementation of the edgeR in python

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6.7 years ago

Hamid ▴ 10

Hi Biostars, I wonder if there is an implementation of edgeR calcNormFactors (i.e. normalization) in python. I'm not comfortable with R.

Thanks

RNA-Seq next-gen sequencing normalization • 5.6k views

ADD COMMENT • link updated 5.2 years ago by joonyoon.jay ▴ 10 • written 6.7 years ago by Hamid ▴ 10

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I'm not comfortable with R.

Eh, does one ever get comfortable with R?

Anyway, as far as I know: no, there is no Python implementation. And using R is not that bad since the documentation for this package is decent.

ADD REPLY • link 6.7 years ago by WouterDeCoster 47k

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Thanks man :) Ok, so where is that documentation?

ADD REPLY • link 6.7 years ago by Hamid ▴ 10

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Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized.

ADD REPLY • link 6.7 years ago by GenoMax 141k

score 1 · Answer 1 · 2019-01-30

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5.2 years ago

joonyoon.jay ▴ 10

Maybe this could help.

ADD COMMENT • link 5.2 years ago by joonyoon.jay ▴ 10