Hello, I am new at RNA-Seq data analysis and I want to analyze the data and do some analyses such as finding differentially expressed genes. My data set is from NCBI GEO and coded as GSE80336. Link is here:
I see data is not normalized. How can I download the data from GEO with R, normalize it and make analyses? Is there a good pipeline for that?
Also there is a file called "Counts.txt" in supplementary. What is this file actually and can I use it?