Question: Explanation of BETA output
0
gravatar for benjyrolls
2.3 years ago by
benjyrolls70
benjyrolls70 wrote:

Hello,

I have an RNA-Seq experiment( OCT4 KO vs WT mouse) and ChIP-Seq experiment ( WT vs OCT4 enriched ChIP sample).

I have analysed my Cuffdiff differential expressed gene output from my RNA-Seq with my OCT4 enriched peaks bed file using Cistrome BETA and obtained this output

am trying to understand what this Output means in terms of the BETA manual

Can I say that from this output in BETA in the absence of OCT4 the genes in the image output are rcontrolling the up regulated genes. What conclusions can I make from this output from BETA ?

Benjy

ADD COMMENTlink modified 2.3 years ago by Prakash1.7k • written 2.3 years ago by benjyrolls70
1
gravatar for Prakash
2.3 years ago by
Prakash1.7k
India
Prakash1.7k wrote:

Have you put this question in BETA google group ?

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by Prakash1.7k
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