Explanation of BETA output

Question

[benjyrolls]

Hello,

I have an RNA-Seq experiment( OCT4 KO vs WT mouse) and ChIP-Seq experiment ( WT vs OCT4 enriched ChIP sample).

I have analysed my Cuffdiff differential expressed gene output from my RNA-Seq with my OCT4 enriched peaks bed file using Cistrome BETA and obtained this output

am trying to understand what this Output means in terms of the BETA manual

Can I say that from this output in BETA in the absence of OCT4 the genes in the image output are rcontrolling the up regulated genes. What conclusions can I make from this output from BETA ?

Benjy

Answer 1

[Prakash]

Have you put this question in BETA google group ?