Question: Which strategy to get draft genome: rawread mapping or de novo assembly?
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gravatar for curiousbiologist
4 weeks ago by
France
curiousbiologist30 wrote:

Hi all,

I want to generate a clean consensus genome from fastq files. I also have a close reference I would like your opinion about what is the best strategy to get a draft genome: I can't determine from bibliography the best strategy: rawread mapping or de novo assembly? or both?

Is there a reference pipeline I missed?

Thanks a lot!

genome assembly consensus • 170 views
ADD COMMENTlink written 4 weeks ago by curiousbiologist30
1

You can give a look here

ADD REPLYlink written 4 weeks ago by Fabio Marroni1.4k

thank you Fabio! very usefull

ADD REPLYlink written 4 weeks ago by curiousbiologist30
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