Which strategy to get draft genome: rawread mapping or de novo assembly?
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4.1 years ago

Hi all,

I want to generate a clean consensus genome from fastq files. I also have a close reference I would like your opinion about what is the best strategy to get a draft genome: I can't determine from bibliography the best strategy: rawread mapping or de novo assembly? or both?

Is there a reference pipeline I missed?

Thanks a lot!

consensus Assembly genome • 1.1k views
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You can give a look here

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thank you Fabio! very usefull

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