Question: How Splice Junction database( is generated from GTF(ENSEMBL) and Reference Genome (GRCh38) using STAR Aligner during Genome indexing
gravatar for inambioinfo
9 months ago by
inambioinfo50 wrote:

As am not an expert in the field, Hence I could like to know few basic concept on how STAR generate Splice Junctions Database(sjdb/ while indexing the reference genome with gtf file.

I find information from STAR Manual:

Under session : 8.5 Splice Junctions Database

But couldn't able to understand how only with reference genome and GTF file, Splice junction file is constructed within the genome directory.

I really appreciate your valuable response in advance.

ADD COMMENTlink modified 8 months ago by Biostar ♦♦ 20 • written 9 months ago by inambioinfo50
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