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5.6 years ago
tarek.mohamed ▴ 350
I used the cytosnp-12 bead chip for karyotyping of some samples. I have the idat and gtc files which I analysed using bluefuse multi software. Now I need to get the raw genotype calls, how can I extract this data?
What is the output of BlueFuse Multi? Extract raw calls from idat or gtc? Or extract from downstream files?
Hi, I have both files, so I want to extract raw genotype calls from either of them. Thanks, T
Check for pointers on Recalling SNPs count from Illumina SNP array raw data, Read binary Illumina GTC files (1000 genomes) and Illumina HumanOmniExpress IDAT files.