Question: How to make a nice mutation overview figure like this?
0
gravatar for Floris Brenk
3.1 years ago by
Floris Brenk950
USA
Floris Brenk950 wrote:

Hi all,

Does anyone know how to make a nice mutation overview figure like this nice figure? I found a similar way to make these plots with GenVisR But was curious whether there are also other packages out there?

Thanks Floris

R • 1.8k views
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Floris Brenk950
1

outside R: http://www.cbioportal.org/mutation_mapper.jsp in R, trackviewer

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by cpad011214k

Also very nice thanks!

ADD REPLYlink written 3.1 years ago by Floris Brenk950

How To Create Mutation Diagram In R Or In Any Tools?

ADD REPLYlink written 10 months ago by zx87549.6k
1
gravatar for Floris Brenk
3.1 years ago by
Floris Brenk950
USA
Floris Brenk950 wrote:

In the end I think this is the easiest way -> Lollipops

ADD COMMENTlink written 3.1 years ago by Floris Brenk950
2
gravatar for Ibrahim Tanyalcin
3.1 years ago by
Belgium
Ibrahim Tanyalcin1.1k wrote:

Hi Floris.

I worked on a similar project some years ago. Does this sort of representation work for you? You can see some other examples at this post as well. There is also the github repository in case you want to take a look at the project files before you download anything. This is not in R though, its in javascript.

ADD COMMENTlink written 3.1 years ago by Ibrahim Tanyalcin1.1k

Looks very pretty and interesting thanks! I only have ~50 mutations per gene so I think the circos plot is a bit too complicated to show for those genes...

ADD REPLYlink written 3.1 years ago by Floris Brenk950
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