How to find target genes of long non coding RNA
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4.3 years ago
bk11 ▴ 50

Hi, I am new to long non coding RNA data analysis. How can I predict/identify target genes of long non coding? Is there any code available for this study?

RNA-Seq • 1.9k views
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4.3 years ago
lsp03yjh ▴ 810

You can use starBase to discover lncRNA-miRNA and lncRNA-RBP interactions.

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How can bedtools be used for this propose? Is there any bash scripts available? I want to identify the co-expressed genes around 5-10 kb up/downstream of differentially expressed long non coding RNA.

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