Download list of all genes of genome build GRCh38.p0
1
1
Entering edit mode
3.7 years ago
akij ▴ 100

I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this

gene name   chromosome  start  end
  ZNF331        19:53569378-53577953
gene • 3.0k views
ADD COMMENT
0
Entering edit mode

As you are interested in ALL genes, how about trying to download the GTF from the Ensembl FTP release 76, the first with GRCh38?

ADD REPLY
0
Entering edit mode

Hi! Thanks a lot. Is there any API where I can input chromosome regions like 19:53569378-53577953 and get a list of Genes within this region for genome build GRCh38.p0?

ADD REPLY
0
Entering edit mode
ADD REPLY
0
Entering edit mode

Use bioMart or UCSC TableBrowser.

https://genome.ucsc.edu/cgi-bin/hgTables

ADD REPLY
1
Entering edit mode
3.7 years ago
aka001 ▴ 190

You can use Ensembl BioMart to do that.

ADD COMMENT
0
Entering edit mode

Could you explain how? I don't see the build version I mentioned there

ADD REPLY
0
Entering edit mode

Patches are unlikely to cause major changes in gene information so you should be able to use the current GRCh38 build.

ADD REPLY

Login before adding your answer.

Traffic: 1436 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6