I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this
gene name chromosome start end
As you are interested in ALL genes, how about trying to download the GTF from the Ensembl FTP release 76, the first with GRCh38?
Hi! Thanks a lot. Is there any API where I can input chromosome regions like 19:53569378-53577953 and get a list of Genes within this region for genome build GRCh38.p0?
Ensembl REST API.
Use bioMart or UCSC TableBrowser.
You can use Ensembl BioMart to do that.
Could you explain how? I don't see the build version I mentioned there
Patches are unlikely to cause major changes in gene information so you should be able to use the current GRCh38 build.
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