I am using BWA to align the raw reads against a contig set. I would like to know the overall mismatch rate as well as indels in the entire alignment (SAM/BAM). I tried various options of samtools/bamtools, but could not able to find this.
Question: Mismatch and Indel rate in alignment
2.3 years ago by
sbdk82 • 60
sbdk82 • 60 wrote:
ADD COMMENT • link •
Please log in to add an answer.
Powered by Biostar version 2.3.0
Traffic: 785 users visited in the last hour