Question: Alignment of two different file format
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gravatar for amoolya36
2.2 years ago by
amoolya360
amoolya360 wrote:

Can we align a .fna file with .fastq file in multiple sequence alignment using Biopython?

alignment tutorial • 735 views
ADD COMMENTlink modified 2.2 years ago by Michael Dondrup46k • written 2.2 years ago by amoolya360
1

Please be more specific, why do you want to do that? The first question should be if it makes sense, and it most likely doesn't.

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by Michael Dondrup46k

This question can be answered by just runnning your python program and seeing if you get any errors..I haven't tried it but you may definetly get errors because .fna just contains the nucleic acid sequence whereas fastq contains your sequence with their corresponding quality scores..

To convert fastq to fasta format, check this out- Fastq Convert To Fasta

ADD REPLYlink written 2.2 years ago by prasundutta87360

Convert fastq to fasta and then align them together (whatever you're up to... ^^)

ADD REPLYlink written 2.2 years ago by Macspider3.0k
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