Question: Display similarity between two RNA-Seq datasets
0
gravatar for mygamefun3
13 months ago by
mygamefun30
mygamefun30 wrote:

I am now analyzing the data of the two RNA-SEQs, and how to express the two sequencing results with great similarity, ie, there is a great overlap between the ascending and descending genes. What is the way to show their phenotypic similarity. Is there any relevant paper recommended. Very grateful!

rna-seq • 596 views
ADD COMMENTlink modified 13 months ago by theobroma221.1k • written 13 months ago by mygamefun30

Could you please define basis of phenotypic similarity? You can show the venn diagram of DEGs, DETs, DEEs, similar pathways, GO term enrichment between two sets. Since it is RNAseq data, you can also show if there is similar transcript switching between two data sets.

ADD REPLYlink modified 13 months ago • written 13 months ago by cpad01129.3k

Could you give some examples? Thanks a lot!

ADD REPLYlink written 13 months ago by mygamefun30
1
gravatar for theobroma22
13 months ago by
theobroma221.1k
theobroma221.1k wrote:

You could show this using volcano plots.

ADD COMMENTlink written 13 months ago by theobroma221.1k

Thanks, could you provide a example for me?

ADD REPLYlink written 13 months ago by mygamefun30

Creating Interactive Volcano Plots with R and Plot.ly

ADD REPLYlink written 13 months ago by theobroma221.1k
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