Question: Display similarity between two RNA-Seq datasets
0
gravatar for mygamefun3
15 months ago by
mygamefun30
mygamefun30 wrote:

I am now analyzing the data of the two RNA-SEQs, and how to express the two sequencing results with great similarity, ie, there is a great overlap between the ascending and descending genes. What is the way to show their phenotypic similarity. Is there any relevant paper recommended. Very grateful!

rna-seq • 641 views
ADD COMMENTlink modified 15 months ago by theobroma221.1k • written 15 months ago by mygamefun30

Could you please define basis of phenotypic similarity? You can show the venn diagram of DEGs, DETs, DEEs, similar pathways, GO term enrichment between two sets. Since it is RNAseq data, you can also show if there is similar transcript switching between two data sets.

ADD REPLYlink modified 15 months ago • written 15 months ago by cpad011210k

Could you give some examples? Thanks a lot!

ADD REPLYlink written 15 months ago by mygamefun30
1
gravatar for theobroma22
15 months ago by
theobroma221.1k
theobroma221.1k wrote:

You could show this using volcano plots.

ADD COMMENTlink written 15 months ago by theobroma221.1k

Thanks, could you provide a example for me?

ADD REPLYlink written 15 months ago by mygamefun30

Creating Interactive Volcano Plots with R and Plot.ly

ADD REPLYlink written 15 months ago by theobroma221.1k
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