Question: Batch PFam search
0
gravatar for anuprabha.mandal
21 months ago by
anuprabha.mandal0 wrote:

I have a fasta sequence file with multiple protein entries. I want to find out which PFam domains do each of the sequence belong to along with the domain boundaries (in text format preferably for parsing). I have tried Batch PFam web search tool however it is taking way longer than usual. i have many such files and need to use it on a regular basis. Please help.

sequence • 1.0k views
ADD COMMENTlink written 21 months ago by anuprabha.mandal0
2

Download PfamScan from ftp://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/ and use it from the command-line.

ADD REPLYlink written 21 months ago by a.zielezinski8.6k
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