Tool: GeneFuse: gene fusion detection and visualization with interactive HTML report
1
gravatar for chen
18 months ago by
chen1.8k
OpenGene
chen1.8k wrote:

GeneFuse is a tool to detect and visualize gene fusions. It is written in C++ and only depends on libz library.

It can generate interactive HTML report with following information:

  • the fusion genes, along with their transcripts.
  • the inferred break point with reference genome coordinations.
  • the inferred fusion protein, with all exons and the transcription direction.
  • the supporting reads, with all bases colorized according to their quality scores.
  • the number of supporting reads, and how many of them are unique (the rest may be duplications)

Informative and interactive HTML report

Github project

https://github.com/OpenGene/FusionScan

HTML report screenshot

image
See the HTML page of this picture: http://opengene.org/FusionScan/report.html

This tool is renamed to GeneFuse since FusionScan is taken by another older project.

genefuse tool fusion opengene • 1.6k views
ADD COMMENTlink modified 18 months ago • written 18 months ago by chen1.8k

Hi Chen,

Unfortunately you choose a name for your tool that has been already taken. GENEFUSE is my entity I have used it for some time. If you wish to continue to use that name you would have to include me (Anthony Vattay) as a "collaborator".

By the way where are you located. I am in Cambridge MA.

We could discuss future experiments.

Cheers, Tony Anthony Vattay genefuse@gmail.com

ADD REPLYlink modified 13 months ago • written 13 months ago by genefuse0
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