Question: Which tool is recommended for detecting CNVs in whole exome sequencing?
1
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20 months ago by
United States
bioinforesearchquestions210 wrote:

Hello friends,

Which tool is recommended for detecting CNVs in whole exome sequencing?

ADD COMMENTlink written 20 months ago by bioinforesearchquestions210
1

There are many tools for CNV detection but it depends on the type of your data. Some below mentioned tools list need control or normal samples and if that is not available check for the manuals on how to analyse without providing control. They are not specifically designed for whole exome sequencing but works well.


  1. CNVkit
  2. OncoCNV
  3. ControlFREEC
  4. Quandico
  5. CNVpanelizer

Good Luck!

ADD REPLYlink modified 20 months ago • written 20 months ago by mittu1602150
3

I add XHMM (http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml )

ADD REPLYlink written 20 months ago by Titus850
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