Question: Which tool is recommended for detecting CNVs in whole exome sequencing?
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2.7 years ago by
United States
bioinforesearchquestions280 wrote:

Hello friends,

Which tool is recommended for detecting CNVs in whole exome sequencing?

ADD COMMENTlink written 2.7 years ago by bioinforesearchquestions280
1

There are many tools for CNV detection but it depends on the type of your data. Some below mentioned tools list need control or normal samples and if that is not available check for the manuals on how to analyse without providing control. They are not specifically designed for whole exome sequencing but works well.


  1. CNVkit
  2. OncoCNV
  3. ControlFREEC
  4. Quandico
  5. CNVpanelizer

Good Luck!

ADD REPLYlink modified 2.7 years ago • written 2.7 years ago by mittu1602180
3

I add XHMM (http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml )

ADD REPLYlink written 2.7 years ago by Titus910
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