Question: nr- protein database
0
gravatar for kinggang
3.4 years ago by
kinggang0
kinggang0 wrote:

hai

Hi I want to download complete Plant nr- protein database from ncbi. is there any link is available for this ?

blast rna-seq • 1.2k views
ADD COMMENTlink modified 3.4 years ago by lessismore930 • written 3.4 years ago by kinggang0
1
gravatar for lessismore
3.4 years ago by
lessismore930
Mexico
lessismore930 wrote:

It's here : ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plant/

ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by lessismore930

This link is for all plant refseq files (DNA and protein). Since the original request was for nr-protein data it may be better to extract the sequences from nr blast database using blastdbcmd and parsing the taxID for plants.

ADD REPLYlink written 3.4 years ago by GenoMax95k

thank you for the reply ..i will try

ADD REPLYlink written 3.4 years ago by kinggang0
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