Question: nr- protein database
0
gravatar for kinggang
21 months ago by
kinggang0
kinggang0 wrote:

hai

Hi I want to download complete Plant nr- protein database from ncbi. is there any link is available for this ?

blast rna-seq • 753 views
ADD COMMENTlink modified 21 months ago by lessismore630 • written 21 months ago by kinggang0
1
gravatar for lessismore
21 months ago by
lessismore630
Mexico
lessismore630 wrote:

It's here : ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plant/

ADD COMMENTlink modified 21 months ago • written 21 months ago by lessismore630

This link is for all plant refseq files (DNA and protein). Since the original request was for nr-protein data it may be better to extract the sequences from nr blast database using blastdbcmd and parsing the taxID for plants.

ADD REPLYlink written 21 months ago by genomax68k

thank you for the reply ..i will try

ADD REPLYlink written 21 months ago by kinggang0
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