Question: Downloading the latest human genome
2
gravatar for KVC_bioinfo
3.2 years ago by
KVC_bioinfo510
Boston
KVC_bioinfo510 wrote:

Hello,

I want to download the entire latest human genome for using it as a reference in mapping to RNA-seq data. I am aware that I can do that with the following link:

Download human genome

However, I want one fasta file with all chromosomes. Is there any way to download it ? or I have to download individually and concatenate it?

Thank you in advance

#fasta #download #humangenome • 5.2k views
ADD COMMENTlink modified 3.2 years ago by shoujun.gu370 • written 3.2 years ago by KVC_bioinfo510

One file from UCSC.

ADD REPLYlink modified 3.2 years ago • written 3.2 years ago by genomax92k

Thank you very much!

ADD REPLYlink written 3.2 years ago by KVC_bioinfo510

This does not give me one file.

ADD REPLYlink written 3.2 years ago by KVC_bioinfo510

Link has been updated. Try now.

ADD REPLYlink modified 3.2 years ago • written 3.2 years ago by genomax92k
1
gravatar for Satyajeet Khare
3.2 years ago by
Satyajeet Khare1.6k
Pune, India
Satyajeet Khare1.6k wrote:

Just check the Readme file in the same folder. I guess you need Primary or Toplevel file. Look up for more information in case and decide accordingly.

ADD COMMENTlink written 3.2 years ago by Satyajeet Khare1.6k
1
gravatar for tiago211287
3.2 years ago by
tiago2112871.2k
USA
tiago2112871.2k wrote:

There are many places to download the full human genome, I suggest gencode:

Genome sequence, primary assembly (GRCh38)

ADD COMMENTlink written 3.2 years ago by tiago2112871.2k
0
gravatar for shoujun.gu
3.2 years ago by
shoujun.gu370
Rockville/MD
shoujun.gu370 wrote:

Gencode is my favorite clean and clear

ADD COMMENTlink written 3.2 years ago by shoujun.gu370
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