Question: Downloading the latest human genome
0
gravatar for KVC_bioinfo
17 months ago by
KVC_bioinfo350
Boston
KVC_bioinfo350 wrote:

Hello,

I want to download the entire latest human genome for using it as a reference in mapping to RNA-seq data. I am aware that I can do that with the following link:

Download human genome

However, I want one fasta file with all chromosomes. Is there any way to download it ? or I have to download individually and concatenate it?

Thank you in advance

#fasta #download #humangenome • 1.7k views
ADD COMMENTlink modified 17 months ago by shoujun.gu370 • written 17 months ago by KVC_bioinfo350

One file from UCSC.

ADD REPLYlink modified 17 months ago • written 17 months ago by genomax62k

Thank you very much!

ADD REPLYlink written 17 months ago by KVC_bioinfo350

This does not give me one file.

ADD REPLYlink written 17 months ago by KVC_bioinfo350

Link has been updated. Try now.

ADD REPLYlink modified 17 months ago • written 17 months ago by genomax62k
1
gravatar for Satyajeet Khare
17 months ago by
Satyajeet Khare1.3k
Pune, India
Satyajeet Khare1.3k wrote:

Just check the Readme file in the same folder. I guess you need Primary or Toplevel file. Look up for more information in case and decide accordingly.

ADD COMMENTlink written 17 months ago by Satyajeet Khare1.3k
1
gravatar for tiago211287
17 months ago by
tiago2112871.1k
USA
tiago2112871.1k wrote:

There are many places to download the full human genome, I suggest gencode:

Genome sequence, primary assembly (GRCh38)

ADD COMMENTlink written 17 months ago by tiago2112871.1k
0
gravatar for shoujun.gu
17 months ago by
shoujun.gu370
Rockville/MD
shoujun.gu370 wrote:

Gencode is my favorite clean and clear

ADD COMMENTlink written 17 months ago by shoujun.gu370
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