Question: Matrix Creation Help
gravatar for zshores
3.1 years ago by
zshores0 wrote:

I am attempting to assemble a part of a prokaryotic genome from an illumina assembly of a prokaryotic cell. We were advised to generate our own matrix file with using our assembled genome. Previously to this we assembled the genome with velveth and velvetg. My question is - for matrix creation, do I use the contigs.fa or the Sequences file in the velvetg output? All they say about in the GeneMark manual is to us the assembled genome and not much more in regards to that. Thanks!

ADD COMMENTlink modified 3.1 years ago by Biostar ♦♦ 20 • written 3.1 years ago by zshores0
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