Mapping changes in the Amino Acid sequence based on cDNA

Question

[demell.april1]

I have FASTA sequence files of the cDNA of multiple alleles from Magnaporthe Oryzae (fungi). I need a way to map where the amino acid changes will occur, based on the known nucleotide changes I have. I looked at Ensembl Variant effect predictor, but the Magnaporthe genome is not available using that tool.

[Pierre Lindenbaum]

but the Magnaporthe genome is not available using that tool.

it is.

http://fungi.ensembl.org/Saccharomyces_cerevisiae/Tools/VEP?db=core