Question: Rn28s1 28S ribosomal RNA [ Mus musculus] annotation in GTF file
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gravatar for efratk
10 weeks ago by
efratk0
efratk0 wrote:

Hi,

I looked at the GTF file M13 from the GENCODE (https://www.gencodegenes.org/mouse_releases/13.html) and I found the gene name for the 18S ribosomal RNA (Rn18s), but I couldn't find the 28S ribosomal RNA (Rn28s). Does anyone know about it? Does it call in other name?

Thanks

sequencing rna-seq gene genome • 174 views
ADD COMMENTlink modified 10 days ago by Biostar ♦♦ 20 • written 10 weeks ago by efratk0

That's a tough one. Did you try Ensembl blast with 28s rRNA sequence from NCBI?

ADD REPLYlink written 10 weeks ago by Satyajeet Khare1.1k
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