Question: Rn28s1 28S ribosomal RNA [ Mus musculus] annotation in GTF file
gravatar for efratk
15 months ago by
efratk0 wrote:


I looked at the GTF file M13 from the GENCODE ( and I found the gene name for the 18S ribosomal RNA (Rn18s), but I couldn't find the 28S ribosomal RNA (Rn28s). Does anyone know about it? Does it call in other name?


sequencing rna-seq gene genome • 583 views
ADD COMMENTlink modified 13 months ago by Biostar ♦♦ 20 • written 15 months ago by efratk0

That's a tough one. Did you try Ensembl blast with 28s rRNA sequence from NCBI?

ADD REPLYlink written 15 months ago by Satyajeet Khare1.3k
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