I am looking for a summary list of most popular methods or algorithms (NOT a list of 1000+ methods) for ngs data analysis like gatk , gsea , bwa , rsem etc. I am wondering if there is any resource for that.
Try here https://omictools.com/sequencing-category
This Github has a very extensive list of tools, methodologies, and information pertaining to ChIP-seq experiments and data analysis.
The above links have an extensive list of NGS analysis tools. Hope this helps.
Just out of curiosity. What kind of tools you are looking for?specifically for what kind of analysis?