Question: Predict the effect of SNPs in a VCF file generated using a Trinity assembly
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gravatar for TrentGenomics
3.5 years ago by
TrentGenomics30 wrote:

Is there software or script available to predict the effect of SNPs that have Trinity headers? Reference databases use different header formats than Trinity, so I can't use snpEff etc.

There must be a solution to this. Maybe not?

snp • 916 views
ADD COMMENTlink modified 3.5 years ago by Istvan Albert ♦♦ 86k • written 3.5 years ago by TrentGenomics30
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gravatar for Istvan Albert
3.5 years ago by
Istvan Albert ♦♦ 86k
University Park, USA
Istvan Albert ♦♦ 86k wrote:

You can build custom annotations for SnpEff from a GFF file:

http://snpeff.sourceforge.net/SnpEff_manual.html#databases

ADD COMMENTlink written 3.5 years ago by Istvan Albert ♦♦ 86k
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