Question: Could not locate a HISAT2 index to basename
0
gravatar for saj98
2.0 years ago by
saj98100
saj98100 wrote:

Hello everyone I am first time trying to use HISAT, I am getting the following error message

I am using the following command: /usr/bin/hisat2 -p 10 --dta -x usr/bin/rn6/genome -1 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq.gz -2 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R2_001.fastq.gz -S WS020_h.sam
It gave me the following error message: Could not locate a HISAT2 index corresponding to basename "usr/bin/rn6/genome"

Any help Thanks

rna-seq • 1.2k views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 2.0 years ago by saj98100
2
gravatar for genomax
2.0 years ago by
genomax71k
United States
genomax71k wrote:

You are likely missing a leading / in path for index name usr/bin/rn6/genome in your command. You need to provide qualified relative or full paths for files in your command.

ADD COMMENTlink modified 2.0 years ago • written 2.0 years ago by genomax71k

Yes, I corrected the path, now is running

Thank you

ADD REPLYlink written 2.0 years ago by saj98100
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