Question: Could not locate a HISAT2 index to basename
0
gravatar for saj98
5 months ago by
saj9850
saj9850 wrote:

Hello everyone I am first time trying to use HISAT, I am getting the following error message

I am using the following command: /usr/bin/hisat2 -p 10 --dta -x usr/bin/rn6/genome -1 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq.gz -2 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R2_001.fastq.gz -S WS020_h.sam
It gave me the following error message: Could not locate a HISAT2 index corresponding to basename "usr/bin/rn6/genome"

Any help Thanks

rna-seq • 351 views
ADD COMMENTlink modified 5 months ago by nancydong2060 • written 5 months ago by saj9850
1
gravatar for genomax
5 months ago by
genomax42k
United States
genomax42k wrote:

You are likely missing a leading / in path for index name usr/bin/rn6/genome in your command. You need to provide qualified relative or full paths for files in your command.

ADD COMMENTlink modified 5 months ago • written 5 months ago by genomax42k

Yes, I corrected the path, now is running

Thank you

ADD REPLYlink written 5 months ago by saj9850
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 902 users visited in the last hour