Could not locate a HISAT2 index to basename
1
0
Entering edit mode
6.5 years ago
saj98 ▴ 140

Hello everyone I am first time trying to use HISAT, I am getting the following error message

I am using the following command: /usr/bin/hisat2 -p 10 --dta -x usr/bin/rn6/genome -1 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R1_001.fastq.gz -2 Documents/Shaima/Seq/Pros/S/WS020_S6_L002_R2_001.fastq.gz -S WS020_h.sam
It gave me the following error message: Could not locate a HISAT2 index corresponding to basename "usr/bin/rn6/genome"

Any help Thanks

RNA-Seq • 2.6k views
ADD COMMENT
2
Entering edit mode
6.5 years ago
GenoMax 139k

You are likely missing a leading / in path for index name usr/bin/rn6/genome in your command. You need to provide qualified relative or full paths for files in your command.

ADD COMMENT
0
Entering edit mode

Yes, I corrected the path, now is running

Thank you

ADD REPLY

Login before adding your answer.

Traffic: 2024 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6