Question: MEME motif width
0
gravatar for rbronste
10 weeks ago by
rbronste150
rbronste150 wrote:

When putting such a command into MEME:

meme *.fa -maxsize 1000000 -dna -minw 8 -maxw 25 -nmotifs 1

It splits up what its looking for into 8, 11, 15, 21 and 25

My question is whether it is looking between those sizes for any motifs that range lets say between 11 and 15 or only looking for those that are 11 and 15 nucleotides in length?

Thanks.

motif meme chip-seq • 175 views
ADD COMMENTlink written 10 weeks ago by rbronste150

It should search all sizes between minw and maxw.

ADD REPLYlink written 10 weeks ago by Asaf4.6k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 611 users visited in the last hour