Question: how to show geographical relationship of contigs from the two assemblies
gravatar for Mehmet
11 days ago by
Mehmet170 wrote:

Dear All,

I want to compare some contigs from two different assemblies of the same animal species. For instance, I want to compare a big contig from assembly A. The big contig will contain small contigs from assembly B. I also want to show haplotype collapse between the assembly A and assembly B.

Which tools/programs and flowchart do you suggest?

Thank you

ADD COMMENTlink modified 11 days ago by h.mon8.7k • written 11 days ago by Mehmet170
gravatar for h.mon
11 days ago by
h.mon8.7k wrote:

Mauve is one of the easiest to use and has a graphical interface with some (on my opinion) nice graphic presentation of the results.

ADD COMMENTlink written 11 days ago by h.mon8.7k
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