Question: how to show geographical relationship of contigs from the two assemblies
gravatar for Mehmet
8 months ago by
Mehmet320 wrote:

Dear All,

I want to compare some contigs from two different assemblies of the same animal species. For instance, I want to compare a big contig from assembly A. The big contig will contain small contigs from assembly B. I also want to show haplotype collapse between the assembly A and assembly B.

Which tools/programs and flowchart do you suggest?

Thank you

ADD COMMENTlink modified 8 months ago by h.mon14k • written 8 months ago by Mehmet320
gravatar for h.mon
8 months ago by
h.mon14k wrote:

Mauve is one of the easiest to use and has a graphical interface with some (on my opinion) nice graphic presentation of the results.

ADD COMMENTlink written 8 months ago by h.mon14k
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