Question: awesome cancer genomics
1
gravatar for Pappu
9 weeks ago by
Pappu1.8k
Pappu1.8k wrote:

I am looking for a awesome list of bioinformatics tools for cancer genomics. I am wondering if there is anything like that.

rna-seq chip-seq • 214 views
ADD COMMENTlink modified 9 weeks ago by Kevin Blighe6.3k • written 9 weeks ago by Pappu1.8k

Can you define awesome? Would COSMIC help?

ADD REPLYlink written 9 weeks ago by Denise - Open Targets4.0k
2
gravatar for Kevin Blighe
9 weeks ago by
Kevin Blighe6.3k
Republic of Ireland (Éire)
Kevin Blighe6.3k wrote:

People usually go to https://omictools.com/ in order to get an idea. My advice to you, however, would be to read published manuscripts and see what the top groups in cancer have been using. There are many -really, many- bioinformatics tools out there that allow us to do just about everything. It's a skill in its own right to read published work and copy the methods, and then develop them further to suit your own needs/requirements.

Also, experience of trying out different programs is invaluable but is the best way to figure out which is best. Each program will invariably deal with a particular part of a problem better than the other programs, and I would say that it's up to us to figure out which is best.

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by Kevin Blighe6.3k
0
gravatar for Macspider
9 weeks ago by
Macspider1.6k
Vienna - BOKU
Macspider1.6k wrote:

TCGA: https://cancergenome.nih.gov/abouttcga/aboutdata/analyticaltools

ADD COMMENTlink written 9 weeks ago by Macspider1.6k
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