Retrieving coverage image

Question

[BPors]

Hi!

I am trying to visualize the coverage of my gene expression using IGV, and, I want to retrieve a high resolution and compact IGV image. Or, with the usage of any other tools. I found that I can use DEGseq however I am not very fluent with R, therefore have not try it yet.

Do you have any suggestions?

Thank you very much.

[Pierre Lindenbaum]

high resolution and compact IGV image.

this looks incompatible to me.

[Buffo]

look at this How To Plot Read Coverage Over Many Different Genomic Regions?

[Kevin Blighe]

I would upload the data to the UCSC Genome Browser, display the coverage profile as people do for ChIP-seq, and then save the screen as PDF.

See here: https://genome.ucsc.edu/FAQ/FAQcite.html