Assembly Id to UCSC names
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6.6 years ago
ypriverol • 0

Hi all:

Another NCBI/UCSC question. I have all the assembly Ids such as:

GCA_000001405.15

GCA_000164845.2

And I would like to get the corresponding UCSC assembly name:

hg38

vicpac2

If the Assembly ID corresponds to a patch, and not UCSC is available for it, then I would like to have the closer "parent" assembly. I have created a manual json file for it, but I guess using the NCBI or UCSC services, this is possible programmatically?

REgards Yasset

UCSC ENSEMBL NCBI • 1.3k views
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you have already asked some questions on this site but you haven't validated them (green mark on the left). e.g: Retrieve all ids from NCBI

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Green mark in the post ? Where?

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in any "good" answer, on the left.

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