Converting different annotation file formats (GTF/GFF/BED) to each other
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6.7 years ago
Javad ▴ 150

Hello everybody,

What is the most efficient way to convert different annotation file formats to each other.

GFF --> GTF

GTF --> BED

Thanks in advance.

rna-seq next-gen • 3.8k views
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Thanks It was very helpful.

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If you need to reverse the conversion (e.g. BED -> GTF), here is recently developed tool written in rust bed2gtf

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now there is also bed2gff if you want to convert .bed files to .gff3 files!

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