Entering edit mode
6.5 years ago
qwzhang0601
▴
80
Hello:
I am trying to get functional annotation of some protein sequences using InterProScan (v5). Briefly, I want to search the domain information, GO term and pathways. Although I add "-pa" (for pathway) in my command, I only get annotation for domain and Go terms. Does anyone have suggestions on how to get pathway annotation?
my command
interproscan.sh -appl PfamA -iprlookup -goterms -pa -f tsv -i ../proteins.fasta
Many thanks