Question: Tools for Saturation analysis and gene body coverage analysis
0
gravatar for Javad
2.2 years ago by
Javad60
Javad60 wrote:

Hello,

I have a set of RNA-seq data and I want to perform saturation analysis and gene body coverage analysis on them. Which tools can I use for this type of analysis?

Thanks

rna-seq • 1.1k views
ADD COMMENTlink modified 11 months ago by JY Nam20 • written 2.2 years ago by Javad60
1
gravatar for JY  Nam
11 months ago by
JY Nam20
South Korea
JY Nam20 wrote:

For gene body coverage analysis, you can use RSeQC tool.

RSeQC

ADD COMMENTlink modified 11 months ago • written 11 months ago by JY Nam20

As for the saturation part of the analysis I think you have to do the subsampling for the bam file yourself.

ADD REPLYlink written 11 months ago by kristoffer.vittingseerup2.6k
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