Question: Tools for Saturation analysis and gene body coverage analysis
0
gravatar for Javad
3.0 years ago by
Javad120
Javad120 wrote:

Hello,

I have a set of RNA-seq data and I want to perform saturation analysis and gene body coverage analysis on them. Which tools can I use for this type of analysis?

Thanks

rna-seq • 1.4k views
ADD COMMENTlink modified 21 months ago by JY Nam30 • written 3.0 years ago by Javad120
1
gravatar for JY  Nam
21 months ago by
JY Nam30
South Korea
JY Nam30 wrote:

For gene body coverage analysis, you can use RSeQC tool.

RSeQC

ADD COMMENTlink modified 21 months ago • written 21 months ago by JY Nam30

As for the saturation part of the analysis I think you have to do the subsampling for the bam file yourself.

ADD REPLYlink written 21 months ago by kristoffer.vittingseerup3.4k
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