I am new to Bioinformatics field, I have an assembly available for one of the fungi (14.5mb) but this one is not end to end assembly. we have got the PacBio sequencing done for the same strain of an organism.
a. I wan to check the quality of these reads (something like fastqc). b. I want to improve the existing assembly using PacBio long reads. c. calculate N50 value for the final assembly.
Please forgive me if the question is already asked in some other forum, I tried my best to get the answer.
Thanks a lot in advance :)
Bhagya C T