Entering edit mode
6.6 years ago
lavanya.kannan
▴
20
I am trying to run my preranked rnk file (generated using the DESEQ results). I followed the instructions given in http://genomespot.blogspot.com/2014/09/data-analysis-step-8-pathway-analysis.html to generate it.
When I run the rnk file GSEA, I get the following error:
"After pruning, none of the genes passed size thresholds."
How do I troubleshoot this?
It will be easy if you can provide the parameters used for the analysis.