Question: Suitable tool for full length LTR (long terminal Repeat)-retrotransposon
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2.8 years ago by
nusrat.bot0
nusrat.bot0 wrote:

Hello Everybody,

I have to find full-length LTR-retrotransposon from the publicly available assembled database. Can anybody please suggest me suitable tools and procedure. I have just started today and have no idea where to start. I know some tools like LTR-finder, LTR-harvester. But those are Linux based. Currently, I am a windows user. And want to try something in windows. For your information, I have the access to Geneious. So I can easily do sequence blast and so on. What do you think that it will be a good idea to use publicly available consensus LTR sequence for blast search??/

sequence gene • 1.5k views
ADD COMMENTlink modified 2.8 years ago by genomax85k • written 2.8 years ago by nusrat.bot0

Your set of restrictions (windows, Geneious) makes it unlikely you will get any suggestions, as they probably don't match the skill set of Biostars users.

ADD REPLYlink written 2.8 years ago by h.mon30k
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