Entering edit mode
7.1 years ago
mms140130
▴
60
Hello,
I am wondering how to map these probes to genes symbol? for methylation 27K
I have data look like this
TCGA-A1-A0SD-01A-11D-A112-05 TCGA-A2-A04N-01A-11D-A112-05
cg00000292 0.60555263 0.74339575
cg00002426 0.06197412 0.07044132
cg00003994 0.33345006 0.32317983
cg00005847 0.67217034 0.43624235
cg00006414 NA NA
cg00007981 0.05555761 0.05560326
or is the following is the annotation??
Gene_Symbol Chromosome Genomic_Coordinate
cg00000292 ATP2A1 16 28890100
cg00002426 SLMAP 3 57743543
cg00003994 MEOX2 7 15725862
cg00005847 HOXD3 2 177029073
cg00006414 ZNF425;ZNF398 7 148822837
cg00007981 PANX1 11 93862594
appreciate your help, could you please show the R code from BIconductor ? I can't find it in the manual Illumina Illumina Human Methylation 27k annotation data
Looks like I found the solution :)