Question: Convert DiffBind output to standard BED or NarrowPeak format
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gravatar for rbronste
18 months ago by
rbronste230
rbronste230 wrote:

Trying to figure out how to convert a differentially called list from DiffBind into one of these standard formats?

ADD COMMENTlink modified 18 months ago by Rory Stark500 • written 18 months ago by rbronste230
2
gravatar for Rory Stark
18 months ago by
Rory Stark500
University of Cambridge, Cancer Research UK - Cambridge Institute
Rory Stark500 wrote:

You can generate bed files from a GRanges object (as returned by dba.report) using export.bed() from the rtracklayer package.

> library(rtracklayer)
> dbsites <- dba.report(myDBA, contrast=1, th=0.05)
> export.bed(dbsites,"dbsites.bed")
ADD COMMENTlink modified 18 months ago • written 18 months ago by Rory Stark500
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