Question: ENCODE methylation pipeline for command line
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gravatar for christacaggiano
2.1 years ago by
UCSF
christacaggiano30 wrote:

Hi,

Does anyone know of an implementation of the ENCODE WGBS pipeline for the command line? I am familiar with the DNAnexus implementation and this implementation, https://github.com/ENCODE-DCC/dna-me-pipeline , however, I cannot get the above to work on our lab's cluster

The pipeline I am referring to is this https://www.encodeproject.org/wgbs/

Thanks!

wgbs methylation encode • 596 views
ADD COMMENTlink written 2.1 years ago by christacaggiano30
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