Question: R package to plot mutational frequency
2
gravatar for U
14 months ago by
U70
Boston, MA
U70 wrote:

Does anyone know the R or python package used to produce an image as given below. I would like to plot tumor frequency models. Thanks

Mutational burden plot

rna-seq next-gen R • 1.1k views
ADD COMMENTlink modified 14 months ago by Mike1.1k • written 14 months ago by U70
1
gravatar for Mike
14 months ago by
Mike1.1k
UK
Mike1.1k wrote:

Have a look at following packages...

GenVisR (parameter mutBurden)

https://bioconductor.org/packages/devel/bioc/vignettes/GenVisR/inst/doc/GenVisR_intro.html

maftools

https://bioconductor.org/packages/devel/bioc/vignettes/maftools/inst/doc/maftools.html

How to create a mutation landscape (waterfall) plot with GenVisR

ADD COMMENTlink modified 14 months ago • written 14 months ago by Mike1.1k
0
gravatar for igor
14 months ago by
igor7.1k
United States
igor7.1k wrote:

I don't know if there is a package for that, but you can use ggplot geom_jitter to do something similar. It's not the same, but it will let you see the distribution of the individual values.

enter image description here

ADD COMMENTlink written 14 months ago by igor7.1k
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